[ { "id": 1, "genome_id": 1, "accession": "NZ_AMPO01000001", "version": "NZ_AMPO01000001.1", "version_number": 1, "genbank_accession": "AMPO01000001", "genbank_version": "AMPO01000001.1", "name": "Contig01", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig01, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000001.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 570091, "stats": {} }, { "id": 2, "genome_id": 1, "accession": "NZ_AMPO01000002", "version": "NZ_AMPO01000002.1", "version_number": 1, "genbank_accession": "AMPO01000002", "genbank_version": "AMPO01000002.1", "name": "Contig02", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig02, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000002.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 296182, "stats": {} }, { "id": 3, "genome_id": 1, "accession": "NZ_AMPO01000003", "version": "NZ_AMPO01000003.1", "version_number": 1, "genbank_accession": "AMPO01000003", "genbank_version": "AMPO01000003.1", "name": "Contig03", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig03, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000003.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 270236, "stats": {} }, { "id": 4, "genome_id": 1, "accession": "NZ_AMPO01000004", "version": "NZ_AMPO01000004.1", "version_number": 1, "genbank_accession": "AMPO01000004", "genbank_version": "AMPO01000004.1", "name": "Contig04", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig04, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000004.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 220515, "stats": {} }, { "id": 5, "genome_id": 1, "accession": "NZ_AMPO01000005", "version": "NZ_AMPO01000005.1", "version_number": 1, "genbank_accession": "AMPO01000005", "genbank_version": "AMPO01000005.1", "name": "Contig05", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig05, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000005.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 210515, "stats": {} }, { "id": 6, "genome_id": 1, "accession": "NZ_AMPO01000006", "version": "NZ_AMPO01000006.1", "version_number": 1, "genbank_accession": "AMPO01000006", "genbank_version": "AMPO01000006.1", "name": "Contig06", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig06, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000006.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 153737, "stats": {} }, { "id": 7, "genome_id": 1, "accession": "NZ_AMPO01000007", "version": "NZ_AMPO01000007.1", "version_number": 1, "genbank_accession": "AMPO01000007", "genbank_version": "AMPO01000007.1", "name": "Contig07", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig07, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000007.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 144689, "stats": {} }, { "id": 8, "genome_id": 1, "accession": "NZ_AMPO01000008", "version": "NZ_AMPO01000008.1", "version_number": 1, "genbank_accession": "AMPO01000008", "genbank_version": "AMPO01000008.1", "name": "Contig08", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig08, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000008.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 143258, "stats": {} }, { "id": 9, "genome_id": 1, "accession": "NZ_AMPO01000009", "version": "NZ_AMPO01000009.1", "version_number": 1, "genbank_accession": "AMPO01000009", "genbank_version": "AMPO01000009.1", "name": "Contig09", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig09, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000009.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 140229, "stats": {} }, { "id": 10, "genome_id": 1, "accession": "NZ_AMPO01000010", "version": "NZ_AMPO01000010.1", "version_number": 1, "genbank_accession": "AMPO01000010", "genbank_version": "AMPO01000010.1", "name": "Contig10", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig10, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000010.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 130711, "stats": {} }, { "id": 11, "genome_id": 1, "accession": "NZ_AMPO01000011", "version": "NZ_AMPO01000011.1", "version_number": 1, "genbank_accession": "AMPO01000011", "genbank_version": "AMPO01000011.1", "name": "Contig11", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig11, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000011.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 111173, "stats": {} }, { "id": 12, "genome_id": 1, "accession": "NZ_AMPO01000012", "version": "NZ_AMPO01000012.1", "version_number": 1, "genbank_accession": "AMPO01000012", "genbank_version": "AMPO01000012.1", "name": "Contig12", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig12, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000012.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 108702, "stats": {} }, { "id": 13, "genome_id": 1, "accession": "NZ_AMPO01000013", "version": "NZ_AMPO01000013.1", "version_number": 1, "genbank_accession": "AMPO01000013", "genbank_version": "AMPO01000013.1", "name": "Contig13", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig13, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000013.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 82042, "stats": {} }, { "id": 14, "genome_id": 1, "accession": "NZ_AMPO01000014", "version": "NZ_AMPO01000014.1", "version_number": 1, "genbank_accession": "AMPO01000014", "genbank_version": "AMPO01000014.1", "name": "Contig14", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig14, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000014.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 55063, "stats": {} }, { "id": 15, "genome_id": 1, "accession": "NZ_AMPO01000015", "version": "NZ_AMPO01000015.1", "version_number": 1, "genbank_accession": "AMPO01000015", "genbank_version": "AMPO01000015.1", "name": "Contig15", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig15, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000015.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 23773, "stats": {} }, { "id": 16, "genome_id": 1, "accession": "NZ_AMPO01000016", "version": "NZ_AMPO01000016.1", "version_number": 1, "genbank_accession": "AMPO01000016", "genbank_version": "AMPO01000016.1", "name": "Contig16", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig16, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000016.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 9981, "stats": {} }, { "id": 17, "genome_id": 1, "accession": "NZ_AMPO01000017", "version": "NZ_AMPO01000017.1", "version_number": 1, "genbank_accession": "AMPO01000017", "genbank_version": "AMPO01000017.1", "name": "Contig17", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig17, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000017.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 2951, "stats": {} }, { "id": 18, "genome_id": 1, "accession": "NZ_AMPO01000018", "version": "NZ_AMPO01000018.1", "version_number": 1, "genbank_accession": "AMPO01000018", "genbank_version": "AMPO01000018.1", "name": "Contig18", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig18, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000018.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 1997, "stats": {} }, { "id": 19, "genome_id": 1, "accession": "NZ_AMPO01000019", "version": "NZ_AMPO01000019.1", "version_number": 1, "genbank_accession": "AMPO01000019", "genbank_version": "AMPO01000019.1", "name": "Contig19", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig19, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000019.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 1951, "stats": {} }, { "id": 20, "genome_id": 1, "accession": "NZ_AMPO01000020", "version": "NZ_AMPO01000020.1", "version_number": 1, "genbank_accession": "AMPO01000020", "genbank_version": "AMPO01000020.1", "name": "Contig20", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig20, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000020.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 1588, "stats": {} }, { "id": 21, "genome_id": 1, "accession": "NZ_AMPO01000021", "version": "NZ_AMPO01000021.1", "version_number": 1, "genbank_accession": "AMPO01000021", "genbank_version": "AMPO01000021.1", "name": "Contig21", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig21, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000021.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 1, 1 (5S, 16S, 23S)\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 1249, "stats": {} }, { "id": 22, "genome_id": 1, "accession": "NZ_AMPO01000022", "version": "NZ_AMPO01000022.1", "version_number": 1, "genbank_accession": "AMPO01000022", "genbank_version": "AMPO01000022.1", "name": "Contig22", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig22, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000022.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 958, "stats": {} }, { "id": 23, "genome_id": 1, "accession": "NZ_AMPO01000023", "version": "NZ_AMPO01000023.1", "version_number": 1, "genbank_accession": "AMPO01000023", "genbank_version": "AMPO01000023.1", "name": "Contig23", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig23, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000023.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 872, "stats": {} }, { "id": 24, "genome_id": 1, "accession": "NZ_AMPO01000024", "version": "NZ_AMPO01000024.1", "version_number": 1, "genbank_accession": "AMPO01000024", "genbank_version": "AMPO01000024.1", "name": "Contig24", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig24, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000024.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 376, "stats": {} }, { "id": 25, "genome_id": 1, "accession": "NZ_AMPO01000025", "version": "NZ_AMPO01000025.1", "version_number": 1, "genbank_accession": "AMPO01000025", "genbank_version": "AMPO01000025.1", "name": "Contig25", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig25, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000025.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 367, "stats": {} }, { "id": 26, "genome_id": 1, "accession": "NZ_AMPO01000026", "version": "NZ_AMPO01000026.1", "version_number": 1, "genbank_accession": "AMPO01000026", "genbank_version": "AMPO01000026.1", "name": "Contig26", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig26, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000026.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 359, "stats": {} }, { "id": 27, "genome_id": 1, "accession": "NZ_AMPO01000027", "version": "NZ_AMPO01000027.1", "version_number": 1, "genbank_accession": "AMPO01000027", "genbank_version": "AMPO01000027.1", "name": "Contig27", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig27, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000027.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 355, "stats": {} }, { "id": 28, "genome_id": 1, "accession": "NZ_AMPO01000028", "version": "NZ_AMPO01000028.1", "version_number": 1, "genbank_accession": "AMPO01000028", "genbank_version": "AMPO01000028.1", "name": "Contig28", "role": "unplaced-scaffold", "assigned_molecule": "na", "type": "na", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum DSM 3637 Contig28, whole genome shotgun sequence.", "molecule_type": "DNA", "is_circular": false, "annotation_date": "2017-11-23", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nAMPO01000028.\nSource DNA is available from the German Collection of\nMicroorganisms and Cell Cultures (DSMZ).\nAnnotation was added by the NCBI Prokaryotic Genomes Automatic\nAnnotation Pipeline Group. Information about the Pipeline can be\nfound here:\nhttp://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be\naware that the annotation is done automatically with little or no\nmanual curation.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.5.3\nGenome Coverage :: 60x\nSequencing Technology :: 454 GS FLX Titanium\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 11/23/2017 14:19:03\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,576\nCDS (total) :: 2,522\nGenes (coding) :: 2,476\nCDS (coding) :: 2,476\nGenes (RNA) :: 54\nrRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\ncomplete rRNAs :: 3, 1, 1 ( 5S, 16S, 23S )\npartial rRNAs ::\ntRNAs :: 47\nncRNAs :: 2\nPseudo Genes (total) :: 46\nPseudo Genes (ambiguous residues) :: 0 of 46\nPseudo Genes (frameshifted) :: 13 of 46\nPseudo Genes (incomplete) :: 32 of 46\nPseudo Genes (internal stop) :: 3 of 46\nPseudo Genes (multiple problems) :: 2 of 46\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##", "length": 347, "stats": {} }, { "id": 29, "genome_id": 2, "accession": "NZ_CP006933", "version": "NZ_CP006933.1", "version_number": 1, "genbank_accession": "CP006933", "genbank_version": "CP006933.1", "name": "ANONYMOUS", "role": "assembled-molecule", "assigned_molecule": "na", "type": "Chromosome", "genbank_refseq_relationship": "=", "definition": "Methanobacterium formicicum strain BRM9, complete genome.", "molecule_type": "DNA", "is_circular": true, "annotation_date": "2017-04-09", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nCP006933.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nSource DNA available from Dr. Graeme Attwood\n(graeme.attwood@agresearch.co.nz) at AgResearch Limited, New\nZealand.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.2.00.20\nGenome Coverage :: 97x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 04/09/2017 18:36:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 2,420\nCDS (total) :: 2,367\nGenes (coding) :: 2,342\nCDS (coding) :: 2,342\nGenes (RNA) :: 53\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 2\nPseudo Genes (total) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 21 of 25\nPseudo Genes (incomplete) :: 3 of 25\nPseudo Genes (internal stop) :: 4 of 25\nPseudo Genes (multiple problems) :: 2 of 25\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.", "length": 2449987, "stats": {} }, { "id": 30, "genome_id": 3, "accession": "NC_009515", "version": "NC_009515.1", "version_number": 1, "genbank_accession": "CP000678", "genbank_version": "CP000678.1", "name": "ANONYMOUS", "role": "assembled-molecule", "assigned_molecule": "na", "type": "Chromosome", "genbank_refseq_relationship": "=", "definition": "Methanobrevibacter smithii ATCC 35061, complete genome.", "molecule_type": "DNA", "is_circular": true, "annotation_date": "2017-03-30", "comment": "REFSEQ INFORMATION: The reference sequence was derived from\nCP000678.\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nAvailable from the ATCC.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 03/29/2017 22:12:43\nAnnotation Pipeline :: NCBI Prokaryotic Genome\nAnnotation Pipeline\nAnnotation Method :: Best-placed reference protein\nset; GeneMarkS+\nAnnotation Software revision :: 4.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\nrepeat_region\nGenes (total) :: 1,793\nCDS (total) :: 1,749\nGenes (coding) :: 1,710\nCDS (coding) :: 1,710\nGenes (RNA) :: 44\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 35\nncRNAs :: 2\nPseudo Genes (total) :: 39\nPseudo Genes (ambiguous residues) :: 0 of 39\nPseudo Genes (frameshifted) :: 23 of 39\nPseudo Genes (incomplete) :: 16 of 39\nPseudo Genes (internal stop) :: 15 of 39\nPseudo Genes (multiple problems) :: 13 of 39\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.", "length": 1853160, "stats": {} } ]